About Us
The Advanced Biomedical Computational Science (ABCS) is a part of the Information Systems Program at SAIC-Frederick, Frederick National Laboratory for Cancer Research (FNLCR). The ABCS provides technology development, scientific consultation, collaboration and training, and high-performance computing support to the National Cancer Institute (NCI) and National Institutes of Health (NIH) scientists and staff.
Below is a list of a few selected publications relevant to non-B DB by the ABCS personnel:
| Author(s) | Title and Journal | Link |
|---|---|---|
| Cer RZ, Bruce KH, Donohue DE, Temiz NA, Mudunuri US, Yi M, Volfovsky N, Bacolla A, Luke BT, Collins JR, Stephens RM. | Searching for non-B DNA-forming motifs using nBMST (non-B DNA motif search tool. Curr Protoc Hum Genet. 2012 Apr;Chapter 18:Unit 18.7.1-22. | Pubmed |
| Bacolla A, Wang G, Jain A, Chuzhanova NA, Cer RZ, Collins JR, Cooper DN, Bohr VA, Vasquez KM. | Non-B DNA-forming sequences and WRN deficiency independently increase the frequency of base substitution in human cells. J Biol Chem. 2011 Feb. | Pubmed |
| Cer RZ, Bruce KH, Mudunuri US, Yi M, Volfovsky N, Luke BT, Bacolla A, Collins JR, Stephens RM | Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes. Nucleic Acids Res. 2011;39(Database issue):D383-91. | Pubmed |
| Akagi K, Stephens RM, Li J, Evdokimov E, Kuehn MR, Volfovsky N, Symer DE | MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains. Nucleic Acids Res. 2010;38(Database issue):D600-6. | Pubmed |
| Mudunuri U, Che A, Yi M, Stephens RM. | bioDBnet: the biological database network. Bioinformatics. 2009;25(4):555-6. | Pubmed |
| Mechanic LE, Luke BT, Goodman JE, Chanock SJ, Harris CC. | Polymorphism Interaction Analysis (PIA): a method for investigating complex gene-gene interactions. BMC Bioinformatics 2008;9:146. | Pubmed |
| Bacolla A, Larson JE, Collins JR, Li J, Milosavljevic A, Stenson PD, Cooper DN, Wells RD. | Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties. Genome Res. 2008 Oct;18(10):1545-5. | Pubmed |
| Bacolla A, Collins JR, Gold B, Chuzhanova N, Yi M, Stephens RM, Stefanov S, Olsh A, Jakupciak JP, Dean M, Lempicki RA, Cooper DN, Wells RD. | Long homopurine*homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region. Nucleic Acids Res. 2006 May 19;34(9):2663-75. | Pubmed |
| Goodman JE, Mechanic LE, Luke BT, Ambs S, Chanock S, Harris CC. | Exploring SNP-SNP interactions and colon cancer risk using Polymorphism Interaction Analysis. Intl. J. Cancer 2006;118:1790-7. | Pubmed |